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After the big success of the first Swiss Galaxy Workshop two years ago, we are going to organize a similar event again in fall 2014.
Audience
This workshop is aimed at Galaxy administrators and users alike. We also welcome participants who are using workflow management systems other than Galaxy and tool developers who are looking for such systems to offer their tools to a wider audience.
We would like to discuss the status of the Galaxy project, new developments, interface to other systems, extensions and best practice in reproducible research.
The workshop is part of the SyBIT Tech Day series.
Extra Training Day and Developers Day
Prior to the workshop, we run a Galaxy training/demo Day on Tuesday September, 30th in Bern
Following the workshop, we organise a Developers Day on Thursday, October 2nd in Freiburg (Germany).
Registration
Registration is now closed. Please contact Hans-Rudolf Hotz or Björn Grüning if you want your name to be put on the waiting list. There is a good chance, we can still accommodate you.
Preliminary Schedule
| Time | Speaker | Title | Slides |
|---|---|---|---|
| 9:15 - 9:30 | ARRIVAL | ||
| 9:30 - 9:45 | Hans-Rudolf Hotz (FMI), Björn Grüning (University of Freiburg) | welcome | |
| 9:45 - 10:30 | Dannon Baker (Galaxy Project) | Status of the Galaxy Project | |
| 10:30 - 10:50 | coffee Break | ||
| 10:50 - 11:40 | Björn Grüning (University of Freiburg) | Galaxy: putting pieces together | whiteboard |
| 11:40 - 12:00 | Nikolay Vazov (USIT, University of Oslo) | Authentication in Galaxy : let's use what is out there - National Identity Providers | |
| 12:00 - 13:30 | Lunch Break (lunch will be at 12:15) | ||
| 13:30 - 13:40 | Jeevan Karloss (CIGENE, Norwegian University of Life Sciences) | Elixir Norway and Galaxy | |
| 13:40 - 14:00 | Marco Antonio Mendoza (IGBMC Strasbourg) | NGS-QC Generator: A quality control system for ChIP-seq and enrichment-related NGS datasets | |
| 14:00 - 14:30 | Sarah Diehl (MPI-IE Freiburg) | deepTools: a flexible platform for exploring deep-sequencing data | |
| 14:30 - 15:00 | coffee Break | ||
| 15:00 - 15:30 | Hans-Rudolf Hotz (FMI) | Using Galaxy for NGS analysis in a collaborative environment | |
| 15:30 - 15:45 | Tim-Christoph Roloff (FMI) | Genomics analysis at FMI | |
| 15:45 - 16:00 | Torsten Houwaart (University of Freiburg) | RNA structure visualized in Galaxy | |
| 16:00 - 16:01 | Hans-Rudolf Hotz (FMI), Björn Grüning (University of Freiburg) | concluding remarks | |
| 16:01 - 16:15 | DEPARTURE (....and going to the pub) |
Location
The workshop will be in the UniS-Building (room: A -119) of the Universität Bern, which is a 5 minutes walk away from the main train station.
Support
This workshop is generously supported by SyBIT / SystemsX.ch
Questions?
Contact Hans-Rudolf Hotz or Björn Grüning